PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007005-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 473aa    MW: 51828.1 Da    PI: 6.8861
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007005-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.9e-10188231447
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                             k+ rr+++NReAAr+sR RKka++++Le+   +L++  ++Lkk
  SMil_00007005-RA_Salv 188 QKALRRLAQNREAARKSRMRKKAYVQQLENSRLKLTQLEQELKK 231
                            5889**************************99999988888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-8185249IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507187231IPR004827Basic-leucine zipper domain
PfamPF001701.9E-6189231IPR004827Basic-leucine zipper domain
CDDcd147081.60E-20189238No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-8189232No hitNo description
SuperFamilySSF579593.75E-7189232No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141441.5E-30272345IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MHSFKSAVTQ AIALTSSDVY CHSQSPFYLR GEEGGRNGAR FSDLGELEQS AGNGFHHDDA  60
VNLSRSSMYN DLKASNVSVV SSNLQFGGLN NSLGSAEMVS SATGVDSGQF MSHKGTIVGL  120
CGGGGGGGGA MGNGQFENWG DSGVVADHSQ QTDTSTDTDD KNQYPGVHNE RLMGVDSMDQ  180
LNGKIGDQKA LRRLAQNREA ARKSRMRKKA YVQQLENSRL KLTQLEQELK KVRQQGMFAA  240
SGFHADNSLG GNGALAFDID YARWLDEHHR LINDLRTAVN SHVGDSELRL LVEGVMSHYD  300
EIFRLKSVGA KSDVFHMLSG MWKTPAERCF MWLGGFRCSE VLKILGNQIE PLTDQQLVAM  360
CNLQQSSQQA EDALSQGMEA LQQSLVETLS SNTLAPRNSA NVADYMGQMA IAMSKLATLE  420
NFLHQADLLR QQTLQQLQRI LTTRQAARAL LAISDYRSRL RALSSLWLAR PKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077152.10.0transcription factor HBP-1b(c38)-like
SwissprotQ415581e-165HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A4D9A4X80.0A0A4D9A4X8_SALSN; Transcription factor TGA
STRINGEOY021120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-127bZIP family protein