PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006915-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YA
Protein Properties Length: 314aa    MW: 34571.6 Da    PI: 8.7068
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006915-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.13e-33184240158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh+hAl+R RgsgGrF
  SMil_00006915-RA_Salv 184 DGPIYVNAKQYHGILRRRQTRAKLEAQNKL-VKTRKPYLHESRHQHALNRVRGSGGRF 240
                            57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-37182243IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.201183243IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-28186240IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24186208IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860188208IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-24217240IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQRLEELSKN EPLKVFGYAS GFSYIPKLMA NMHEQHFSQT ISKNLNFEVD CPPQRGQEVK  60
YIDFQLQDQH SSSTESTSLS HKEFTAMGKA GSQDQCASSD SVHDESYGKH GQDMKGGLFL  120
CNPELSINVS HAEITQPIVQ LQYAYADPYF TGLFTPYGPH NIIQPQMMAA ASGRVPLPVD  180
LPEDGPIYVN AKQYHGILRR RQTRAKLEAQ NKLVKTRKPY LHESRHQHAL NRVRGSGGRF  240
LSTKKQQSEA LAAASAGGVD AFHFGYGEGG GDGTRVSGGG DAILQQSDGR FTSMASHGGG  300
MVYNGNRRYA SIVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-22184248266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093783.11e-153nuclear transcription factor Y subunit A-3 isoform X4
RefseqXP_011093784.11e-153nuclear transcription factor Y subunit A-3 isoform X4
TrEMBLA0A4D9BIR01e-142A0A4D9BIR0_SALSN; Uncharacterized protein
STRINGMigut.J00955.1.p2e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-42nuclear factor Y, subunit A3