 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00006780-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
C2H2 |
| Protein Properties |
Length: 292aa MW: 32757.1 Da PI: 5.5004 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00006780-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 22 | 4.2e-07 | 249 | 270 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C++Cgk F+r nL+ H+r H
SMil_00006780-RA_Salv 249 FCTICGKGFKRDANLRMHMRGH 270
6*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MDPDERLCAT TWAKSSSGHE SLNTHSNNRS LTDFDRQQQK WEESSFHGYG VRTSDQQFSG 60
FKRPFASNVD SQRQMNDLHG KQIPEAHELD NMQNWDPRAM LNNLSFLENK IHQLQDLVHL 120
VVGRRGQAMS QADEILVQQQ QLITADLTSI IVQLISTAGS LLPSVKNSEN LTSQLGQFSG 180
TASQSAGVLD NVVHNNANKM EDQHDPTGVF EDHDMKSDDD AEEGENLPPG SYEILQLEKE 240
EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTPAAL AKPQRNRAPN QS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
| Publications
? help Back to Top |
- Kobayashi Y, et al.
Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
Plant Physiol., 2013. 163(1): p. 180-92
[PMID:23839867] - Yokosho K,Yamaji N,Ma JF
Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
Plant Cell Physiol., 2014. 55(12): p. 2077-91
[PMID:25273892] - Geng X, et al.
LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
Plant J., 2017. 90(3): p. 491-504
[PMID:28181322] - Balzergue C, et al.
Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
Nat Commun, 2017. 8: p. 15300
[PMID:28504266] - Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
Front Plant Sci, 2017. 8: p. 822
[PMID:28567051] - Jiang F, et al.
Identification and characterization of suppressor mutants of stop1.
BMC Plant Biol., 2017. 17(1): p. 128
[PMID:28738784] - Daspute AA, et al.
Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
Front Plant Sci, 2017. 8: p. 1358
[PMID:28848571] - Sharma A,Wai CM,Ming R,Yu Q
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
Genome Biol Evol, 2017. 9(9): p. 2170-2190
[PMID:28922793] - Zhang Y, et al.
The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
Front Plant Sci, 2018. 9: p. 118
[PMID:29491872]
|
