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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006772-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 446aa MW: 49273.9 Da PI: 5.135 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106.3 | 1.7e-33 | 223 | 277 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av++LGGs++AtPk +l++m+v+gLt+++vkSHLQkYR+ SMil_00006772-RA_Salv 223 KARMRWTPELHEAFVDAVNKLGGSDRATPKGVLKIMNVEGLTIYNVKSHLQKYRT 277 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.577 | 220 | 280 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-18 | 221 | 277 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 221 | 279 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-25 | 223 | 277 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 225 | 276 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-21 | 310 | 354 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
LSMAPSSFKK TYGGTQSANM EVSGTMVKSL HILPSPLEEK FTLLPDSPQV FSSDSRCPTR 60 IHYSPNGSGS ISSTIYSLSP KEGDSFMENQ HPYSVMQSSQ LDGLAMKNHD VSWNEIENFL 120 DTPLEVPDQD GQIETSMVAE DHAKKTNWQE WAEQLITAND ETLNSNWSDL LIDGNLPDSE 180 PKLLDLPHNA SSHQPQIQRL QPYHVPSVND CPALGSSTAP SSKARMRWTP ELHEAFVDAV 240 NKLGGSDRAT PKGVLKIMNV EGLTIYNVKS HLQKYRTARY KPESPEGTPE KKLKTASDMT 300 SLDLKATVGI TEALRLQMEV QKQLHDQLEI QRKLQIRIEE QGKRLQEMFE QQRKLEEVQG 360 KTSSSNAGRP QTPAKQTQPC SEDDKPESSQ NNTASVKEVA ADVCSSADED QSKKEMSSDN 420 SRAPCSPPSG LTKVSETGTL GSPHEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-30 | 223 | 281 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077052.1 | 1e-155 | protein PHR1-LIKE 1-like isoform X1 | ||||
Refseq | XP_020548743.1 | 1e-155 | protein PHR1-LIKE 1-like isoform X1 | ||||
TrEMBL | A0A4D9A0Y4 | 0.0 | A0A4D9A0Y4_SALSN; Uncharacterized protein | ||||
STRING | Migut.F02036.1.p | 1e-121 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4582 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-79 | phosphate starvation response 1 |