PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006739-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 473aa    MW: 52951.2 Da    PI: 6.5202
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006739-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.35.9e-3085170187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  SMil_00006739-RA_Salv  85 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYNRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 170
                            8*************************************999*****************************98..55667*******85 PP
2trihelix32.91.7e-10345412682
               trihelix   6 evlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                            ev  Li++ + +       ++++  Wee++ km+  g  rs+  Ck+kwe+++++  k+   ++k ts+      yf
  SMil_00006739-RA_Salv 345 EVNRLIQLMEGKL------EAEEMVWEEIATKMACFGHDRSAAACKDKWESIHTYALKCGSKKRKDTSKGA---TYF 412
                            5555555433222......345778**********************************999999765544...455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.002682145IPR001005SANT/Myb domain
PROSITE profilePS500907.15584143IPR017877Myb-like domain
CDDcd122031.37E-2085150No hitNo description
PfamPF138371.3E-2085171No hitNo description
SMARTSM007179.2337393IPR001005SANT/Myb domain
PfamPF138376.1E-8340407No hitNo description
PROSITE profilePS500907.085341391IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEDQYGMADL RQYISSRPLF PPIPPPPDLL SAHRGGLNPY DMLIFRSDSV ATANNNNAGG  60
AAASSSAGFG GFESGLNGGD SGAGRWPRQE TLTLLEIRSR LDPKFKEANQ KGPLWDEVSR  120
IMSEEHGYNR SGKKCREKFE NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGGEPHTTS  180
ASMSEAAGSY HVSFPNKSAL LSAPKLSDTS LSLSNYSEAE TSSSDDSDEG KMMIKKRGGW  240
KVKIREFIDV QMKKLMDKQE AWMEKMMKAM EEKERERAMR EEEWRKHDAA RIEREHKFWA  300
SERAWIEARD AALMDALHKL TAGKDAAESN DDGGSETMAD WAECEVNRLI QLMEGKLEAE  360
EMVWEEIATK MACFGHDRSA AACKDKWESI HTYALKCGSK KRKDTSKGAT YFTGVYCDTQ  420
TSEQGNISLN NNHDHGSSSP NPNTAAAAAM SESCFRYFMG DAYGRIIADA GCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394402LKCGSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094408.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-110PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2G9G8M20.0A0A2G9G8M2_9LAMI; Transcription factor GT-2
STRINGMigut.J00979.1.p1e-159(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-89Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]