PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006528-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 382aa    MW: 43480.6 Da    PI: 4.3425
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006528-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.75.8e-36141062103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl k ye+++de+++elisws++++sf+++de++f++++LpkyFkhsnf+SFvRQLn+YgF+k+++++         w+F+++ F kg
  SMil_00006528-RA_Salv  14 FLVKCYEMVNDESTDELISWSDSNDSFIIWDESKFSSHLLPKYFKHSNFSSFVRQLNIYGFRKIDTDN---------WQFANEAFIKG 92 
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                            +k+ll++i r+k++
  SMil_00006528-RA_Salv  93 QKHLLKNIIRRKNN 106
                            ********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.9E-5510103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.36E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVKSVENGTT LPPFLVKCYE MVNDESTDEL ISWSDSNDSF IIWDESKFSS HLLPKYFKHS  60
NFSSFVRQLN IYGFRKIDTD NWQFANEAFI KGQKHLLKNI IRRKNNHNLV QKKDAEPALQ  120
SEEEDKRLAL WKEVESLKTD RNALTQELTN VRQHQQTSRS KMLLLAEQLK GMEKNQQQML  180
SFIVMAMQSP EIMAQFFQPK ENSWRVAETG KTKLSEVIDD CEPTPSDGTI VRYQPPKDGA  240
AKTACTAEAA FNYEDFMELD FSSDEMRDLL MDVDLLLGPN PVDEKLLSFE NQGQFVLPDA  300
PENDAVLEQL LLPYPSTQNE VPGEACTHSG MACQPDESEN SDASADDVNE DQNQMAEATK  360
FQSSEKVEVL TRQMGSLTSE MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-26910324129Heat shock factor protein 1
5d5v_B7e-26910324129Heat shock factor protein 1
5d5v_D7e-26910324129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070552.10.0heat stress transcription factor A-8
TrEMBLA0A4D9A9C60.0A0A4D9A9C6_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.E00498.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-81heat shock transcription factor A8