PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006527-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C3H
Protein Properties Length: 505aa    MW: 53353.2 Da    PI: 8.4039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006527-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-121843227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                           +++ C +++rtG+C yG+rC+F+H++
  SMil_00006527-RA_Salv 18 DEPDCIYYLRTGFCGYGNRCRFNHPR 43
                           6899********************96 PP
2zf-CCCH32.31.7e-1080104327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C+++ rtG Ck+G++Ck++H++
  SMil_00006527-RA_Salv  80 QPICQYYIRTGMCKFGGSCKYHHPK 104
                            799********************96 PP
3zf-CCCH35.41.8e-11126150327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            +++C+++ +tG+Ck+G +CkF+H++
  SMil_00006527-RA_Salv 126 EKECSYYVKTGQCKFGVTCKFHHPQ 150
                            689********************97 PP
4zf-CCCH352.5e-11293319127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            +++++C+++ rtG Ck+G++Ck++H+p
  SMil_00006527-RA_Salv 293 PGQPECQYYIRTGDCKFGATCKYHHPP 319
                            5789*********************97 PP
5zf-CCCH36.39.4e-12375398427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            +lC+++a++G Ck+G++CkF H++
  SMil_00006527-RA_Salv 375 PLCSHYAQNGVCKFGPSCKFDHPM 398
                            8*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5581644IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-51643IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-91843IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-62044IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-52243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.94377105IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-577104IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-680104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-680105IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5123150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76123151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6124151IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9126150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4129149IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5292319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338292320IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-8294319IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5296319IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-7371398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587371399IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9375398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6375401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5376396IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MWQLGLGGGP EAYPERPDEP DCIYYLRTGF CGYGNRCRFN HPRDRGTVKY VDFASCGGYD  60
HLAMGALRAG GGEYPERVGQ PICQYYIRTG MCKFGGSCKY HHPKQGVGSS APVALNFYGY  120
PLRLGEKECS YYVKTGQCKF GVTCKFHHPQ PAGIPMPPPG PGSLSASAAV PTPAMYPTGP  180
SPSVQSSQQY GVIQGNWPVA RPAMLQGSYV PGSYGHVILP PGVVPVPGWT PYAAPVSHAA  240
SPSNQPTIGA TPIYGIPQLS PSATAYTGPY LSITSSAGLS SGSQKEQAFP ERPGQPECQY  300
YIRTGDCKFG ATCKYHHPPE WNASKTNYVL SPMGLPLRPR LLLLINSNLH MVAPISVQLK  360
PTVSYESMVD LEGAPLCSHY AQNGVCKFGP SCKFDHPMRS LSYSPSASSL TDMPVAPYPV  420
GSTIATLAPS SSSSDLRPEL LSGFIQNAPS SQMSSMSSSS ASVGSIFSKT GALPLSYVQQ  480
SGQGSVSSSG GSSAASHGGE THTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858954.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
SwissprotQ5NAW21e-146C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A4D8Z7M80.0A0A4D8Z7M8_SALSN; Uncharacterized protein
STRINGMigut.G00186.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-118C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]