PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006437-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 239aa MW: 25975 Da PI: 8.7097 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.5 | 1e-30 | 33 | 84 | 5 | 58 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +keC+kNhAa++GghavDGCgE+mp ++ ++ +l CaACgCHRnFHRr+++ SMil_00006437-RA_Salv 33 AFKECMKNHAANIGGHAVDGCGEYMPPSS--DDPISLICAACGCHRNFHRRDPA 84 69************************843..47******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 1.6E-27 | 34 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-17 | 34 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.327 | 34 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-25 | 34 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 128 | 190 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.38E-15 | 129 | 188 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.4E-24 | 132 | 188 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDRDLTPTKS GDETEVDTPP HTHIKSHRRP PPAFKECMKN HAANIGGHAV DGCGEYMPPS 60 SDDPISLICA ACGCHRNFHR RDPAAITPPF LDFRRPGHTQ TSSPSPPFHY GPHVLLALGT 120 AEPAAENLQL GKKRSRTKFS QEQKERMHSF SDKLGWKMHR SDEAAVAEFC RDAGVARGVL 180 KVWMHNNKGT TGARTGNVDV VGGRAMSING SGGDKETRKS DDDNGGRCRN GSGGTLHFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-18 | 133 | 190 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070997.1 | 5e-76 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9LXG0 | 9e-50 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9SEZ1 | 8e-50 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A4D8YIB3 | 9e-71 | A0A4D8YIB3_SALSN; Uncharacterized protein | ||||
STRING | XP_009620302.1 | 2e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 3e-52 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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