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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006434-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 327aa MW: 37087.8 Da PI: 7.2879 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.4 | 4.8e-52 | 5 | 130 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++k+ +++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+d+ SMil_00006434-RA_Salv 5 PGFRFHPTDEELVGFYLTRKILHRPLSI-ELIKQIDIYKYDPWDLPKLATNGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGTDR 91 9***************************.89***************88888999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfykg+a kg ktdW+mhe+rl SMil_00006434-RA_Salv 92 PIYSShTTKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 130 ****856667***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.2 | 3 | 153 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-59 | 4 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-25 | 5 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEELPGFRFH PTDEELVGFY LTRKILHRPL SIELIKQIDI YKYDPWDLPK LATNGEKEWY 60 FYCPRDRKYR NSTRPNRVTG SGFWKATGTD RPIYSSHTTK CIGLKKSLVF YKGKAAKGIK 120 TDWMMHEFRL PSLSPSSTIP INESWAICRI FKKANSNTRR ALSLSHSWPN PILDTTESHI 180 INPLNNTPTM SSSLQFGFSN DFQHSSFSPP YFKPEDHAIS CIETTTPASR CHVVSDATSL 240 LLDMSTSILG GDFGADTAGL SASSFNGFLG TPEDLQRNLV EEAVNMGQVD EQWMEFPYGF 300 PPNLMWDSSS PYPSHLSTTY STNKCYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-55 | 5 | 159 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-55 | 5 | 159 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-55 | 5 | 159 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-55 | 5 | 159 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-55 | 5 | 159 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-55 | 5 | 159 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-55 | 5 | 159 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071000.1 | 1e-126 | putative NAC domain-containing protein 94 | ||||
Swissprot | Q9FIW5 | 2e-90 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | A0A2G9I2U7 | 1e-121 | A0A2G9I2U7_9LAMI; Uncharacterized protein | ||||
STRING | VIT_01s0026g02360.t01 | 1e-122 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-90 | NAC family protein |