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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006337-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | G2-like | ||||||||
Protein Properties | Length: 389aa MW: 42686.9 Da PI: 10.2847 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.9 | 3.9e-27 | 115 | 169 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G +kA+P++ilelm+ ++Lt+++++SHLQkYR++ SMil_00006337-RA_Salv 115 KVKVDWTPELHKQFVQAVEQL-GVDKAVPSKILELMGTDCLTRHNIASHLQKYRSH 169 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.851 | 112 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 113 | 172 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-18 | 114 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.8E-26 | 115 | 169 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.3E-9 | 118 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MLTQNTQLDL EMDPKIHAQI SSRAGDESEM SSNATGLVQV DTIDEGKGNI FIKEEKAPAV 60 SASASATNHG SGSSIVQGEE TVSIREKLVA NLYPRKVDKG RKSSAHINNS SGKRKVKVDW 120 TPELHKQFVQ AVEQLGVDKA VPSKILELMG TDCLTRHNIA SHLQKYRSHR KHLLAREAEV 180 ATWSRKRQLY RTTGSTGKSD ANSWAVPATG FPPVTSVSRS RPFHVWGHPS PNQSLVYMWP 240 GYPASSPSPP AWGAGHSPAP PLTGDPSFWN CHHQDVPAQG MPCYPSHFPQ PSGTKHWCPC 300 RPDWTKTGST TNGLSPVSRE HRCSHWGRSI QAMAAAATWT QTPVHRQRRG GAATSRNIKD 360 TTNLRLSSLL PTPSCRVYSQ YSRSKISPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-16 | 111 | 167 | 1 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847450.1 | 1e-120 | PREDICTED: probable transcription factor GLK1 isoform X3 | ||||
Swissprot | Q9SIV3 | 2e-54 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A4D8Z8P2 | 0.0 | A0A4D8Z8P2_SALSN; Uncharacterized protein | ||||
STRING | Migut.M00145.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 8e-54 | GBF's pro-rich region-interacting factor 1 |