PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006271-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

HSF

Protein Properties

Length: 457aa MW: 50849.5 Da PI: 5.9053

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006271-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.2e-34	20	110	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+ye+++d++++ ++sws + +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+ SMil_00006271-RA_Salv 20 FLLKTYEMVDDSSTDAIVSWSGSRKSFVVWNPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDEFVKD 98 9******************999*************************************999.........******* PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k+ll++i+r+k SMil_00006271-RA_Salv 99 QKHLLKNIHRRK 110 ********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	1.77E-35	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.2E-60	16	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.8E-37	16	109	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.2E-19	20	43	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.5E-30	20	109	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.2E-19	58	70	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	59	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.2E-19	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MDGGASGGMA TGGGGGPAPF LLKTYEMVDD SSTDAIVSWS GSRKSFVVWN PPEFARVLLP 60 SYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANDEFVKDQK HLLKNIHRRK PIHSHSQPQG 120 SVDPERATYE EEIDKLSREK AALEGNLLGF KEQQSAAKVQ LEDLTQRIGS MEQRQEKLLS 180 YLNKSIRNPE FVERLAHKLE SMDFSAYNKK RRLPQADDDV QSFRRLLELS TAVSDVNLLS 240 HSTQSSNEDG VSPQGRIEGW PRDVHMRTAG FICPPETLEL SDTGASLDLQ MDSSLSCKVG 300 PESPKLHSLH HSLTSNDEGD GHLSCLLNLS LASSPLELNK SQNSIVMPQS SSDMCTSSRP 360 NSDIIDAGHR TSPAGRTRLD EAQALSSSPD ANKQGPATEQ KRVNDVFWEQ FLTERPGCSD 420 TEEASSSLRA NPYDEQEEKK SVKAVARNTK GMEHLTL

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MDGGASGGMA TGGGGGPAPF LLKTYEMVDD SSTDAIVSWS GSRKSFVVWN PPEFARVLLP  60
SYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANDEFVKDQK HLLKNIHRRK PIHSHSQPQG  120
SVDPERATYE EEIDKLSREK AALEGNLLGF KEQQSAAKVQ LEDLTQRIGS MEQRQEKLLS  180
YLNKSIRNPE FVERLAHKLE SMDFSAYNKK RRLPQADDDV QSFRRLLELS TAVSDVNLLS  240
HSTQSSNEDG VSPQGRIEGW PRDVHMRTAG FICPPETLEL SDTGASLDLQ MDSSLSCKVG  300
PESPKLHSLH HSLTSNDEGD GHLSCLLNLS LASSPLELNK SQNSIVMPQS SSDMCTSSRP  360
NSDIIDAGHR TSPAGRTRLD EAQALSSSPD ANKQGPATEQ KRVNDVFWEQ FLTERPGCSD  420
TEEASSSLRA NPYDEQEEKK SVKAVARNTK GMEHLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-22	13	109	19	129	Heat shock factor protein 1
5d5v_B	9e-22	13	109	19	129	Heat shock factor protein 1
5d5v_D	9e-22	13	109	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073785.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-148	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A4D8YKV4	0.0	A0A4D8YKV4_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.N00424.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-141	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]