PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00006206-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MYB_related

Protein Properties

Length: 441aa MW: 48671.7 Da PI: 8.2125

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006206-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	31	73	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT E+e+l ++++ lG++ W+ Ia+ ++ gRt++ +k++w+ SMil_00006206-RA_Salv 31 KDAWTRVEEEILRHYHQVLGNK-WADIAKFLP-GRTDNAIKNHWN 73 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.73E-19	19	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-4	20	37	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.638	26	80	IPR017930	Myb domain
SMART	SM00717	1.9E-14	30	78	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	31	73	IPR001005	SANT/Myb domain
CDD	cd00167	2.45E-11	33	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.2E-18	38	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSIPNKHQFR LVFMILMFVR WHNHLDPAIK KDAWTRVEEE ILRHYHQVLG NKWADIAKFL 60 PGRTDNAIKN HWNCSVKKRP DLNSPPILAE LQGSSYLNAF NNEEKLRAES GTILPNSDQK 120 KVTRKIDDSC STIMALGNTK FPADHAQAKP ALLDSFRSSE KFTVNGIHFG LPPTNISGSC 180 FNASSNKVGS CKQSTNSLDN VRTDDLDDVP ANAKAFTSPQ RSRDSPCVTD DRCDHSPVDT 240 VLSLSVCRHT DNSNKTRKRS RICQSPLLAE EESGLSCHDS PQPNDSDIPL CFAGRSGMYN 300 KVEQAYQLVN SYPSNLSLSI FSNVGSPESI LKSSALSYRN TPSIIRRKGF RDVASAICSS 360 TPMLVLSGAA ERKYGDCSNL TSERGCLTPH DSGSGSPVIG QAVERRLEYA FDLEWDSSSV 420 KCNTPGSASE LKADKKIMLT P

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSIPNKHQFR LVFMILMFVR WHNHLDPAIK KDAWTRVEEE ILRHYHQVLG NKWADIAKFL  60
PGRTDNAIKN HWNCSVKKRP DLNSPPILAE LQGSSYLNAF NNEEKLRAES GTILPNSDQK  120
KVTRKIDDSC STIMALGNTK FPADHAQAKP ALLDSFRSSE KFTVNGIHFG LPPTNISGSC  180
FNASSNKVGS CKQSTNSLDN VRTDDLDDVP ANAKAFTSPQ RSRDSPCVTD DRCDHSPVDT  240
VLSLSVCRHT DNSNKTRKRS RICQSPLLAE EESGLSCHDS PQPNDSDIPL CFAGRSGMYN  300
KVEQAYQLVN SYPSNLSLSI FSNVGSPESI LKSSALSYRN TPSIIRRKGF RDVASAICSS  360
TPMLVLSGAA ERKYGDCSNL TSERGCLTPH DSGSGSPVIG QAVERRLEYA FDLEWDSSSV  420
KCNTPGSASE LKADKKIMLT P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-24	20	81	48	109	B-MYB

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550693.1	1e-125	uncharacterized protein LOC105164125
TrEMBL	A0A4D9BA83	0.0	A0A4D9BA83_SALSN; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10393	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	6e-25	myb domain protein 3r-5