PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006193-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MIKC_MADS
Protein Properties Length: 141aa    MW: 16375.9 Da    PI: 10.7508
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006193-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           kri+n++ rqvtfskRrng+lKKA+ELS+LCda+v ++ifsstgkl+e+s+
  SMil_00006193-RA_Salv  9 KRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAQVGLVIFSSTGKLHEFSN 59
                           79***********************************************95 PP
2K-box59.51.4e-20821411069
                  K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                             e++ + +q+e+a L+++i++Lq+++R+l+Ge+L  Ls+++Lq++e+qLe sl+++R kK
  SMil_00006193-RA_Salv  82 PESDVKFWQREAATLRQQIQELQENNRRLMGEELYGLSVNDLQRIEDQLELSLRSVRIKK 141
                            578899***************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
CDDcd002655.80E-44278No hitNo description
SuperFamilySSF554555.62E-34291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1783141IPR002487Transcription factor, K-box
PROSITE profilePS5129711.27386141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGRGKIAIKR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AQVGLVIFSS TGKLHEFSNT  60
SMKSVIERYN KMKEGHRQLL NPESDVKFWQ REAATLRQQI QELQENNRRL MGEELYGLSV  120
NDLQRIEDQL ELSLRSVRIK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22183183MEF2C
5f28_B2e-22183183MEF2C
5f28_C2e-22183183MEF2C
5f28_D2e-22183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073634.13e-82MADS-box transcription factor 23 isoform X2
SwissprotQ6EP493e-70MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A4D8YSR82e-79A0A4D8YSR8_SALSN; MADS-box transcription factor, plant
STRINGXP_010254615.18e-76(Nelumbo nucifera)
STRINGXP_010112258.11e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-72AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]