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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00006160-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 318aa MW: 36515.8 Da PI: 8.8279 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.7 | 1.6e-55 | 23 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+++yL +kv +++++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgk SMil_00006160-RA_Salv 23 LPPGFRFHPSDEELITHYLSHKVVDTSFSP-IAIGEVDLNKVEPWDLPWKAKLGEKEWYFFCMRDRKYPTGMRTNRATEAGYWKATGK 109 79*************************988.78***************888999********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk++++ ++lvg+kktLvfy+grapkg kt+Wvmheyrle SMil_00006160-RA_Salv 110 DKDIFR-AKSLVGMKKTLVFYRGRAPKGLKTNWVMHEYRLE 149 ******.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-63 | 15 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.369 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-29 | 24 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
LPKTEIHIAR MDCMRLDEES IELPPGFRFH PSDEELITHY LSHKVVDTSF SPIAIGEVDL 60 NKVEPWDLPW KAKLGEKEWY FFCMRDRKYP TGMRTNRATE AGYWKATGKD KDIFRAKSLV 120 GMKKTLVFYR GRAPKGLKTN WVMHEYRLEG KHSMHNLNKS ARNEWVICRI FMKTAGGKKV 180 HISGLMSGGA DSQSSDLPPL MEFSSDDNRL ILLLARRRYL TRHNRDFPPF PFAFPNASPL 240 NSSSFPPQLI PRAENSSARD SATMQDQSVI RLLFDNNVPN MKTEFEQGMS GVGFKAYQDQ 300 EIPVISSTAI DLDCLWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 21 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 21 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 21 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 21 | 179 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 20 | 179 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 21 | 179 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 21 | 179 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00496 | DAP | Transfer from AT5G07680 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098651.1 | 1e-142 | NAC domain-containing protein 79 | ||||
Swissprot | Q9FLR3 | 1e-110 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A2G9H007 | 1e-129 | A0A2G9H007_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003380 | 1e-121 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 1e-113 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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