PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006097-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 168aa MW: 18739.3 Da PI: 6.8856

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006097-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.3e-40	10	107	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C++dC + pyfpa++p+kf +vh++FGasn++k+l+++p ++r da++slvyeA ar+++PvyG+v++i +lq+++ SMil_00006097-RA_Salv 10 PCAACKHLRRRCTEDCLFLPYFPAAEPEKFMAVHRVFGASNISKMLQDVPVTDRGDAAASLVYEATARLQQPVYGCVALIASLQKRVF 97 7************************************************************************************* PP DUF260 89 qlkaelallk 98 ql++el+++ SMil_00006097-RA_Salv 98 QLQSELDEVS 107 ***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.396	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-41	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MESNSKSTMP CAACKHLRRR CTEDCLFLPY FPAAEPEKFM AVHRVFGASN ISKMLQDVPV 60 TDRGDAAASL VYEATARLQQ PVYGCVALIA SLQKRVFQLQ SELDEVSATT MRLRTQLSSA 120 LSFIVSSPQS PPLACAAEEG SSHEHNKQLQ QCQYGYSYPQ MKDYYTEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	3	112	4	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	3	112	4	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503570.1	3e-56	PREDICTED: LOB domain-containing protein 25-like isoform X2
Swissprot	Q8L8Q3	5e-41	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S4CR38	6e-55	A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2
STRING	Solyc06g082770.2.1	4e-51	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	2e-43	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]