PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00005941-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | B3 | ||||||||
Protein Properties | Length: 831aa MW: 92109.1 Da PI: 6.6082 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.9e-18 | 305 | 403 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ SMil_00005941-RA_Salv 305 FEKMLSASDAGRIGRLVLPKKCAEAYfpTINHPEGLPLKVQDLKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSMQLQAGDVVTFSR 391 89**************************666777788***************9989999999***9.********************6 PP -SSSEE..EEEEE CS B3 85 dgrsefelvvkvf 97 + e++l ++ + SMil_00005941-RA_Salv 392 LE-PEGKLIMGGR 403 65.6776776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.02E-19 | 302 | 398 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-28 | 302 | 405 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.27E-21 | 303 | 404 | No hit | No description |
SMART | SM01019 | 7.5E-19 | 305 | 406 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 305 | 402 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.955 | 305 | 406 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.603 | 533 | 583 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.0E-11 | 538 | 580 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
LLGFVCVMSS TTEVCFNSNC KDTSEKWRRG WRRRTGEYAH LCDRCASAYE DGKFCETFHM 60 NASGWRCCES CGKTPNPAWP PPLHFLPSQP ERMKDLSMKT WNAIAGSGPV PWRQAPSLFN 120 GSSIQANDQL KVPFEVDVSG GIDRYGLCER LSMASPEIKQ ERSYERLANG KLRLGLPETL 180 QNGNIGLNVK EQHCPFTSDF KPIYPRNDTS SNLSLGIASS SKNEIDDAPV SAILSQLPSV 240 PISLGKQVCS QSGMDSSGEG QIRNGKSRGD GRSRNQLLPR YRPQITDEEL QQISGDSKSV 300 ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPTINHPEGL PLKVQDLKGK EWVFQFRFWP 360 NNNSRMYVLE GITPCIQSMQ LQAGDVVTFS RLEPEGKLIM GGRKASAVPS LDQGEEVNVI 420 GSEASSPGDA SARSKCTDVI SVNGHMKEKI LEDKPVMHVK RKNSNLNAKS KRLRIENEDM 480 MELKLTYKEA QRLIRAPAKI VPSSFVVDGC EFEEFEETEP VIGRPTLLGI DHSGEKIQWV 540 QCEDCFKWRK VPANALVPSK WTCSDNGWDL HRSMCSSAEE LTNEQLEEML PAMNRGPCNK 600 EESSGWDADL CVAVEGLDTL ANLAIEGEGE GLVGSSENRT KHPRHRRGCT CIVCLQPPSG 660 KGIKHRQSCE CVVCTSLKRR FRTLMERREK KQVDKETEPP QSSSENLQGQ LLLEKEQDVD 720 ACVGSDTANR SLNEEEAPNS GHLGEPNARK LSSSPLKGQI DLNIQPEREE DFSPRSDCGA 780 VKCSLPGSAD RFFRQQHRSF DSDAMENLLG KQDGVGCVNI ISCVALDKKS G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-61 | 283 | 406 | 1 | 124 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-61 | 283 | 406 | 2 | 125 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096215.1 | 0.0 | B3 domain-containing protein Os07g0563300 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A4D8YYR6 | 0.0 | A0A4D8YYR6_SALSN; Uncharacterized protein | ||||
STRING | Migut.M01204.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7128 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-132 | HSI2-like 1 |