PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005759-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 360aa    MW: 39840.4 Da    PI: 6.7176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005759-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.1e-072082421655
                            HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +N++f  Lr+++P+       K++Ka+ L  Av YI++L+
  SMil_00005759-RA_Salv 208 LNQRFYALRSVVPNV-----SKMDKASLLADAVTYINQLK 242
                            7*************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-81359IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142155.7E-2166161IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.182192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0072201247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.54E-8208245No hitNo description
PfamPF000102.1E-4208241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-10208255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEIRVSPTP SALHTQLQFI LQSQTERWDY AIFWKSWRGV DGGGRPVLSW GSGYFHGDTV  60
TVPTNTKPDP SESEWFYMAS ITRSFAATDD LVFRAHATAS NVWLVGPQQL NLCGSERAKE  120
ALLHGLTTLA FIPTPYGVVE LGSSDLIKEN WSLIKLVTNS FHPQIQDQKR VLSKTSSGSP  180
ESCDSRDIPP PRTEIQLVDG WQEAQGMLNQ RFYALRSVVP NVSKMDKASL LADAVTYINQ  240
LKSSLTALEA KCARFLKMYN VRSTSAAKTS HAHKLEIEVK ILGSEALIRV QSDDVDHPCA  300
RVMNVLRDLD LEVSRASSSA IGKIMFQEIV IRASDGLCSE EAVKTAIVGR LELMTLSPIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-141982511063Transcription factor MYC2
5gnj_B3e-141982511063Transcription factor MYC2
5gnj_E3e-141982511063Transcription factor MYC2
5gnj_F3e-141982511063Transcription factor MYC2
5gnj_G3e-141982511063Transcription factor MYC2
5gnj_I3e-141982511063Transcription factor MYC2
5gnj_M3e-141982511063Transcription factor MYC2
5gnj_N3e-141982511063Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574920.0KP257492.1 Salvia miltiorrhiza clone 59 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081344.11e-107transcription factor MYC2-like
TrEMBLA0A0H3YB400.0A0A0H3YB40_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-53bHLH family protein