PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005578-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 674aa    MW: 74411.6 Da    PI: 5.3113
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005578-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08543591348
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                            +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  SMil_00005578-RA_Salv 543 PWTLGEVVKLVEGVSKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 591
                            8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.355536595IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-13538596IPR009057Homeodomain-like
SMARTSM007179.4E-9540593IPR001005SANT/Myb domain
SuperFamilySSF466892.32E-16542601IPR009057Homeodomain-like
CDDcd116601.44E-19542592No hitNo description
PfamPF002492.1E-6543591IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
LLSMETVVDM LGDEEARDED FRSQDTADPI VYQLVRVDGN GRLVPATDDE VIAVEDLIED  60
DKCKVRNIDD GQTLGCSINS GSKPCASKTA EFESSEAKPH PPGLCLACYT FPIFYALQNK  120
TKAENCCTIL AELVLRNGST LAHENELKAV NAARALPGIE ILTVVVLELT STKCTTLWHS  180
SPGQTQLKVL EVGREKQILS PEAEIGYIEV DVKHEDKISK LVPNAIDVSE CQSGSVEGCS  240
KHLDESNKAK TSNSPVGADF RPDFSLLNGE IHLDNLSVKD LQEIFHATFG RQTSVKDKEW  300
LKRRIIMGLT NSCDFSTTTL VISDNRVVKK GKDETSQSMD GSVLVDCVVT SALETDESPT  360
TVHDEPIETH PIGNAMAIQS SVSQDNCESN DTDTEQRPVK RVRKPTRRYI EEISEGESRD  420
SGAQTASSLE PPACDQPSEE VCVRPIQNFG LDRRYLTRKD SLGGFGIQVP YVNRIRRSRP  480
RKNFVTLSVA YSERCTSETE RKTLQLEQEV KLKSMETLKS NSDDDVVTVP TANGGMRRKH  540
HRPWTLGEVV KLVEGVSKYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LRASMAESPT  600
GNGMQSSRKH ASVPIPAQIL SRVRELADTQ TQVPPSLTSS KLIRHNDSNN PVTGFGCLDS  660
IGHEVFAPNS VIDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475481RRSRPRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079786.10.0uncharacterized protein LOC105163216 isoform X1
TrEMBLA0A4D9A4B00.0A0A4D9A4B0_SALSN; Uncharacterized protein
STRINGMigut.D00942.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-85TRF-like 6