 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SMil_00005539-RA_Salv |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
| Family |
NAC |
| Protein Properties |
Length: 363aa MW: 40694.4 Da PI: 7.8256 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SMil_00005539-RA_Salv | genome | NDCTCM | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 161.5 | 3.2e-50 | 23 | 148 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d
SMil_00005539-RA_Salv 23 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGAD 109
79***************************.89***************8778899********************************** PP
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl
SMil_00005539-RA_Salv 110 RMIRSENLRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 148
*************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 363 aa
Download sequence Send
to blast |
MAIAADMNNQ ESKQDEHEND VVMPGFRFHP TEEELVEFYL RRKVEGKRFN VELITFLDLY 60
RYDPWELPAL AAIGEKEWYF YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSENLRSI 120
GLKKTLVFYS GKAPKGIRTS WIMNEYRLPH HDTERLQKAE ISLCRVYKRA GVEDHPSLPR 180
CLPTKATASS SRGSQQARKQ QETSTSSRGL IFQPSYGGSP QQTDGKLSET SPTSSADIGT 240
SLALSHGTSF SINPLAPIVA GEDGHLQQQP KTIFSTAASS SNAIDDLHKF VQNYSSSQQA 300
IGHESHHHYN PPNLVSHFAA LQPETQELGA VPASLPAAAA YSDRLWEWSG ISEAGKDYSN 360
LFK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-55 | 24 | 169 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 3e-55 | 24 | 169 | 22 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 2e-55 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 2e-55 | 24 | 169 | 19 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
