PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00005423-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 231aa MW: 25495.9 Da PI: 5.6746 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.7 | 4.6e-21 | 24 | 72 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien snrqvtfskRr g++KKA+EL++L +ae+a+i+ s +++ + SMil_00005423-RA_Salv 24 KKIENLSNRQVTFSKRRVGLFKKASELCILSGAEIAIIVHSLGKRVFSF 72 68*************************************9977776655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-29 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.684 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.42E-33 | 17 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.26E-24 | 17 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-19 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-20 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-19 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-19 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
MVILRESGGA GKKTTQGRKK IEIKKIENLS NRQVTFSKRR VGLFKKASEL CILSGAEIAI 60 IVHSLGKRVF SFGHPSTDAV VDRFLGGGDE LDVAVAATAV NTRDFNRHYS DVSKELEVEK 120 KRRDMIEEQK KAEGHGGGDG FWWNQDVDEM ELDELEQFAM ALEELKKNTD LRANDLMISH 180 SLPPVVAAAS LTMQIPSAAA FEEAPPLFGG QSNFDFENCI VPNQGFGHGQ F |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012835329.1 | 7e-93 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 6e-40 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D9A1P5 | 6e-99 | A0A4D9A1P5_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.N01120.1.p | 3e-92 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-42 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
---|---|---|---|
|