PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005320-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 266aa    MW: 29676.1 Da    PI: 7.5154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005320-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05109128120
                            EEETTTTEEESSHHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                            ++C+ C+k+F+r  n++ H+
  SMil_00005320-RA_Salv 109 FSCSVCSKTFNRYNNMQMHM 128
                            89*****************9 PP
2zf-C2H214.10.00014194216123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk+F  + + ++H +++
  SMil_00005320-RA_Salv 194 FGCRKCGKPFAVRGDWRTHEKNC 216
                            56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-5105132No hitNo description
SMARTSM003550.15109131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-5109128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355180157189IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.0E-6175214No hitNo description
Gene3DG3DSA:3.30.160.607.8E-5180214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355140194214IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSCSDSLYNL EGDEEEDDCS TLLSLGPPGQ PNPHKYHTSF ASYKQHQHIQ NPININASEN  60
GVTVALHIGP PSSSSSSAVN PSDMAALAVA QGQYWIPTPA QILVGPTQFS CSVCSKTFNR  120
YNNMQMHMWG HGSEYRKGPE SLRGTKAASS ILRVPCYCCA EGCKNNIEHP RSKPLKDFRT  180
LQTHYKRKHG SKPFGCRKCG KPFAVRGDWR THEKNCGKLW FCICGSDFKH KRSLKDHVRA  240
FGLGHAPHND TLYAFDEDDE DDDDDN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077223.11e-154zinc finger protein WIP6
SwissprotQ9FX681e-123ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A4D9BNX11e-147A0A4D9BNX1_SALSN; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-123C2H2-like zinc finger protein