PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005319-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family RAV
Protein Properties Length: 313aa    MW: 34569 Da    PI: 11.0249
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005319-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.5e-1458106155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  SMil_00005319-RA_Salv  58 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 106
                            689***9788.8*********3.....5*************************98 PP
2B338.22.5e-122092505596
                            ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3  55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                            +s++yvltkGW++Fvk+++L++gD+v F ++   +++l++ +
  SMil_00005319-RA_Salv 209 NSQSYVLTKGWSRFVKEKNLRAGDIVSFARSTGPDRQLYIDW 250
                            799**************************8766777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1458109IPR016177DNA-binding domain
PfamPF008476.2E-958106IPR001471AP2/ERF domain
CDDcd000183.15E-1958108No hitNo description
PROSITE profilePS5103219.01959115IPR001471AP2/ERF domain
SMARTSM003801.2E-2259117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-1859109IPR001471AP2/ERF domain
SuperFamilySSF1019366.47E-9208245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-12208256IPR015300DNA-binding pseudobarrel domain
CDDcd100172.94E-7209236No hitNo description
PfamPF023624.0E-9209251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDGSSSSIDE STTSESISIT PPAPPPAEKL CRVGSGASVI IDAAENGVEA ESRKLPSSRF  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE EEAARAYDTA AQRFRGRDAS PTSSPSPSAA  120
TTTAAWRRRS SIPTPRPRSS TCEKAHLRRR ARTEPAPLRR RQIRGPLVLA CGEGPRAALR  180
EGRDAQRRRE AEPPRHPQTA CREAFPITNS QSYVLTKGWS RFVKEKNLRA GDIVSFARST  240
GPDRQLYIDW KARNTGTHAR PAMVRLFGVN ILEVPRNGSG ADDTCGGKRL MEMEMQIFGL  300
KNANKKQRII DAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-1920825372117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146152LRRRART
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070834.11e-97AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-71RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A4D9BP051e-112A0A4D9BP05_SALSN; RAV-like factor
STRINGMigut.E00306.1.p4e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1905133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.16e-41ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]