PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005206-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bZIP

Protein Properties

Length: 373aa MW: 41972.6 Da PI: 6.9589

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005206-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.3	2.9e-12	86	117	2	33
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee 33 +++k+ rr+++NReAAr+sR+RKka++++Le SMil_00005206-RA_Salv 86 PPDKVLRRLAQNREAARKSRLRKKAYVQQLES 117 5799**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-7	81	128	No hit	No description
SMART	SM00338	3.1E-5	85	145	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.4E-9	87	117	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.646	87	129	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.73E-21	89	141	No hit	No description
SuperFamily	SSF57959	8.13E-7	89	125	No hit	No description
PROSITE pattern	PS00036	0	92	107	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-26	175	251	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
LTCTQTLIQP TMMNSTSTQF VPSRRMGIYE PIHQMGMWGD FKGNNCLDAS PPMILEVDPK 60 LDNQSEDTSH GTVGPSNKYD QEASKPPDKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL 120 RLIQLEQELG RARQQGLYSG SALDASPLGY AGSMNPGIAT FELEYGHWVE EQDRQLSDLR 180 NALHSSETGD VELRIFVDGG LAHYFDLFTM KAIAAKTDVF FLMSGMWKTS AERFFFWIGG 240 FRPSELLKVL LPHLEPLSEQ QRLDLGNLTQ SCQQAEDALS QGMERLHQIL GEAIAKQLGE 300 GNYLPQVGAA IEKLDDLVRF VGQADHLRQE TLQQISRILT TRQAARGLLA LGEYFQRLRA 360 LSSLWSSRPR QSS

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

LTCTQTLIQP TMMNSTSTQF VPSRRMGIYE PIHQMGMWGD FKGNNCLDAS PPMILEVDPK  60
LDNQSEDTSH GTVGPSNKYD QEASKPPDKV LRRLAQNREA ARKSRLRKKA YVQQLESSKL  120
RLIQLEQELG RARQQGLYSG SALDASPLGY AGSMNPGIAT FELEYGHWVE EQDRQLSDLR  180
NALHSSETGD VELRIFVDGG LAHYFDLFTM KAIAAKTDVF FLMSGMWKTS AERFFFWIGG  240
FRPSELLKVL LPHLEPLSEQ QRLDLGNLTQ SCQQAEDALS QGMERLHQIL GEAIAKQLGE  300
GNYLPQVGAA IEKLDDLVRF VGQADHLRQE TLQQISRILT TRQAARGLLA LGEYFQRLRA  360
LSSLWSSRPR QSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00642	SELEX	Transfer from LOC107771743	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097616.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Refseq	XP_020554278.1	0.0	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
Swissprot	Q39237	1e-176	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A4D8ZE64	0.0	A0A4D8ZE64_SALSN; Transcription factor TGA
STRING	Migut.L00088.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-159	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]