PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005203-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 303aa    MW: 35754.7 Da    PI: 8.77
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005203-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.42.2e-2459141186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                            +W+ qe+++ + +r e++ ++ ++k++k lWe +s +m+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p++++l+
  SMil_00005203-RA_Salv  59 QWSIQETRDFLMIRAELDPNFMETKRNKLLWEVISTRMKEKGYSRSAEQCKCKWKNLVTRYKGCETMETEA---MKQQFPFYNELQ 141
                            7********************************************************************95...45579****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.95E-2358123No hitNo description
PfamPF138376.4E-2059142No hitNo description
PROSITE profilePS500907.16660116IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
LSFFPFHQIF LSSSIIFPSF ALLYMDQGHH HHQQLHHQYS SASVSAAADA SGGGDRFPQW  60
SIQETRDFLM IRAELDPNFM ETKRNKLLWE VISTRMKEKG YSRSAEQCKC KWKNLVTRYK  120
GCETMETEAM KQQFPFYNEL QTIFATRMQR MLWLEAEGSG SAATTSKKKA AAQLSTSEEE  180
ENEESDGQKG GPRKKMRKAK GAANPNSHSV VGGVREMMEE FMKQQMQMEM QWMKAYEARE  240
EERRIKEMEW RQTMEALENE RMMMEKRWRE REEQRKMREE ARAEKRDALI TALLNKLRRE  300
DNM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.11e-133trihelix transcription factor GT-3b
RefseqXP_020553261.11e-133trihelix transcription factor GT-3b
SwissprotO804504e-71TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A4D9C6Y91e-141A0A4D9C6Y9_SALSN; Uncharacterized protein
STRINGMigut.J00154.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.13e-50Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]