PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00005103-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NAC
Protein Properties Length: 436aa    MW: 50610.9 Da    PI: 6.9569
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00005103-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87e-561132421129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPtdeelv++yL++k+++++++l +vik+vd+yk+ePwdL++  ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wka
  SMil_00005103-RA_Salv 113 VPPGFRFHPTDEELVDYYLRRKISNRSIDL-DVIKDVDLYKIEPWDLQElcRIGTeDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKA 199
                            69****************************.9***************954555552555***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            tg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  SMil_00005103-RA_Salv 200 TGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 242
                            *********.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-61110262IPR003441NAC domain
PROSITE profilePS5100560.395113262IPR003441NAC domain
PfamPF023657.1E-29114241IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
APLSLSLYKF HFSSSTYITP IWRSHSPLAQ FSLFLGISPD TCETLRAVIT VCVKGWVLLP  60
RTRYLLLLQF YSLELIFPHN FFHFASTALP QIASISQTSF SRCDSNMNTF SHVPPGFRFH  120
PTDEELVDYY LRRKISNRSI DLDVIKDVDL YKIEPWDLQE LCRIGTEDQN EWYFFSHKDK  180
KYPTGTRTNR ATAAGFWKAT GRDKAIYSKH DLIGMRKTLV FYKGRAPNGQ KSDWIMHEYR  240
LETDENGTPQ EEGWVVCRVF KKRIATTQKL SEHDSPVWYD EHVSFMPDME SPKHHSYNPN  300
HNHLSYSNYP YKKEMPLQYA VPADHFLQLP LLESPKVVQQ QQQAMSCRGL SFSNNHDHQQ  360
HLDQNFHSVF RNTNDQSAEQ VTDWRVLDKF VASQLSQEEV SKDNEAFPAA GDLSKQEMAP  420
ENATTSSSSC QIDLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4911326317166NO APICAL MERISTEM PROTEIN
1ut4_B3e-4911326317166NO APICAL MERISTEM PROTEIN
1ut7_A3e-4911326317166NO APICAL MERISTEM PROTEIN
1ut7_B3e-4911326317166NO APICAL MERISTEM PROTEIN
3swm_A3e-4911326320169NAC domain-containing protein 19
3swm_B3e-4911326320169NAC domain-containing protein 19
3swm_C3e-4911326320169NAC domain-containing protein 19
3swm_D3e-4911326320169NAC domain-containing protein 19
3swp_A3e-4911326320169NAC domain-containing protein 19
3swp_B3e-4911326320169NAC domain-containing protein 19
3swp_C3e-4911326320169NAC domain-containing protein 19
3swp_D3e-4911326320169NAC domain-containing protein 19
4dul_A3e-4911326317166NAC domain-containing protein 19
4dul_B3e-4911326317166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076335.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-137NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A061G7811e-175A0A061G781_THECC; NAC domain protein, IPR003441
TrEMBLA0A2G9GZR11e-175A0A2G9GZR1_9LAMI; Uncharacterized protein
STRINGEOY229091e-176(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-129NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]