PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00005050-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LSD

Protein Properties

Length: 394aa MW: 42988.4 Da PI: 5.707

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00005050-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	21.2	4.7e-07	199	223	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr+l YP GA+ +RC+ C+ V SMil_00005050-RA_Salv 199 CGTCRKLCLYPQGAKWIRCPGCQEV 223 **********************965 PP
2	zf-LSD1	36.5	7.9e-12	237	261	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V C++C +V SMil_00005050-RA_Salv 237 CGGCAVLLMYPHGAPAVECSSCRFV 261 **********************998 PP
3	zf-LSD1	21.2	4.7e-07	300	324	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr+l YP GA+ +RC+ C+ V SMil_00005050-RA_Salv 300 CGTCRKLCLYPQGAKWIRCPGCQEV 324 **********************965 PP
4	zf-LSD1	36.5	7.9e-12	338	362	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP GAp+V C++C +V SMil_00005050-RA_Salv 338 CGGCAVLLMYPHGAPAVECSSCRFV 362 **********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.2E-10	196	226	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.6E-5	199	221	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-9	234	262	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.2E-10	237	261	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.2E-10	297	327	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.6E-5	300	322	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.3E-9	335	363	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.2E-10	338	362	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDDDDDDDGP PPGWEFGKIV NALPNTTSGL SSPATPPPQQ LPSSEQPSDI KEESNEELDE 60 GPPPGWESVL PCQMPQPQTP PLQPPSTVSS NSEMGSKQKT VEMDNEVPQS ESEQTPTPGW 120 SSPATPPPQQ LPSSEQPSDT GNKEEEKKNE EKRPTSVHQP TSPRQQLQSS PLQQLQSNPR 180 PLMPAPKSSS SAEKAQLVCG TCRKLCLYPQ GAKWIRCPGC QEVNFVLEAH EVGQVKCGGC 240 AVLLMYPHGA PAVECSSCRF VTEIGAHNRR PPLPFSRLKL EIREDSVALP QSAEKAQLVC 300 GTCRKLCLYP QGAKWIRCPG CQEVNFVLEA HEVGQVKCGG CAVLLMYPHG APAVECSSCR 360 FVTEIGAHNR RPPLSFQQAQ ARDQRRQRRS APVR

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDDDDDDDGP PPGWEFGKIV NALPNTTSGL SSPATPPPQQ LPSSEQPSDI KEESNEELDE  60
GPPPGWESVL PCQMPQPQTP PLQPPSTVSS NSEMGSKQKT VEMDNEVPQS ESEQTPTPGW  120
SSPATPPPQQ LPSSEQPSDT GNKEEEKKNE EKRPTSVHQP TSPRQQLQSS PLQQLQSNPR  180
PLMPAPKSSS SAEKAQLVCG TCRKLCLYPQ GAKWIRCPGC QEVNFVLEAH EVGQVKCGGC  240
AVLLMYPHGA PAVECSSCRF VTEIGAHNRR PPLPFSRLKL EIREDSVALP QSAEKAQLVC  300
GTCRKLCLYP QGAKWIRCPG CQEVNFVLEA HEVGQVKCGG CAVLLMYPHG APAVECSSCR  360
FVTEIGAHNR RPPLSFQQAQ ARDQRRQRRS APVR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830377.1	1e-85	PREDICTED: formin-like protein 3 isoform X1
TrEMBL	A0A2G9HP83	5e-86	A0A2G9HP83_9LAMI; Uncharacterized protein
STRING	Migut.H01490.1.p	5e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-31	lsd one like 2