![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00004944-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27458.2 Da PI: 9.727 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.1 | 1.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifss+gklye++s SMil_00004944-RA_Salv 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSSKGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 86.2 | 6.5e-29 | 84 | 173 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++s++ e kLk+++e Lq++qRhllGedL++ ++eL qLe L++slk+iRsk++++++eq++ lq+kek+l ++n+aL+kkl SMil_00004944-RA_Salv 84 PDDEQSSYLECLKLKSRVEVLQQSQRHLLGEDLGKFGVRELDQLECVLDTSLKRIRSKQSQHMFEQLSGLQRKEKDLMDINRALQKKL 171 4567999********************************************************************************9 PP K-box 99 ee 100 ee SMil_00004944-RA_Salv 172 EE 173 87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.501 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-33 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.84E-44 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.3E-24 | 84 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.856 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSS KGKLYEFCSS 60 SSMTKTLERY HKSSYGLIEA QQSPDDEQSS YLECLKLKSR VEVLQQSQRH LLGEDLGKFG 120 VRELDQLECV LDTSLKRIRS KQSQHMFEQL SGLQRKEKDL MDINRALQKK LEEGSGSSQL 180 WGEANGNQAS PYRLQPSRPF VFFEPLVGSN SRQIRNNSQL VQNNAEGSAQ NVNAILPAWM 240 Q |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-21 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 7e-21 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 7e-21 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 7e-21 | 1 | 70 | 1 | 69 | MEF2C |
6byy_A | 7e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 8e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102220.1 | 1e-109 | MADS-box protein CMB1-like | ||||
Swissprot | K4BND8 | 4e-94 | MADS4_SOLLC; MADS-box protein 04g005320 | ||||
TrEMBL | A0A4D9BPC4 | 1e-141 | A0A4D9BPC4_SALSN; MADS-box transcription factor, plant | ||||
STRING | XP_009788435.1 | 6e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.2 | 2e-82 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|