PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004709-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 290aa MW: 32864.2 Da PI: 9.3621

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004709-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.4	7.9e-18	20	104	2	80
trihelix 2 WtkqevlaLiearr........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W qe+++Liea++ +++++ +rgk ++ +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ ++s ++ SMil_00004709-RA_Salv 20 WNLQETMVLIEAKKmdderrmkRVGDSTERGKPAELRWKWVEDYCWRKGCFRSQNQCNDKWDNLMRDFKKVREFERRA--ADKSYWR 104 ***********9544433333333333578******************************************95..3444554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.934	12	84	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-11	19	107	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDLTIANEGG VQRDYRKGNW NLQETMVLIE AKKMDDERRM KRVGDSTERG KPAELRWKWV 60 EDYCWRKGCF RSQNQCNDKW DNLMRDFKKV REFERRAADK SYWRMDKIER KDNNLPSNML 120 PLIYEALVAV VDRKPQTTTP PPPPNVPTTL INVEKSTAPS LGVQSPLHPP AILPPPPTSA 180 RPFPTEDSDT SEYSGSAAKR RKRRDGGEGG EVGSAISKGA SIIAEAIQSC EDREDERHKQ 240 MVNLHERKLQ IEETKAEINR QGINGLVDAI NKLANSMLAL AAHTTKPSSK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096764.1	1e-121	trihelix transcription factor ASR3 isoform X2
TrEMBL	A0A2G9HYY0	1e-128	A0A2G9HYY0_9LAMI; Transcription factor GT-2
STRING	Gorai.009G150000.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	6e-58	Trihelix family protein