PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

SMil_00004676-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 271aa MW: 28971.2 Da PI: 7.0786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004676-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.3	9e-11	154	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq SMil_00004676-RA_Salv 154 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.38E-11	148	205	No hit	No description
SuperFamily	SSF47459	8.9E-18	148	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-18	150	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
LHKMDPPLVN EASFTAAANP NSYSLAGLLS FSGSGGLGLR MGNLGRSGGG DASLEESTVT 60 EQSGSGNGGG PKRRRDVGSS FDDDSSKIVS TSSANQDVTD SNAKRAKVFD SGDQLKTETE 120 THSGSSKPVE EKSKPEPPKD YIHVRARRGQ ATDSHSLAER ARREKISERM KILQDLVPGC 180 NKVIGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRLSP TLEGFPSKDL AGPAFDANGM 240 IYGPQTPGVY ARGSQAEWLH MQVGGGFERS T

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257474	0.0	KP257474.1 Salvia miltiorrhiza clone 41 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071749.1	1e-132	transcription factor bHLH79-like isoform X2
Swissprot	Q9LV17	3e-81	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0H3YBS3	0.0	A0A0H3YBS3_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.I00100.1.p	1e-123	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	2e-72	BIG PETAL P

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]