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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004618-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TALE | ||||||||
Protein Properties | Length: 355aa MW: 40606.4 Da PI: 6.2397 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.4 | 2.7e-09 | 282 | 317 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ SMil_00004618-RA_Salv 282 YKWPYPSESEKVALADSTGLDQKQINNWFINQRKRH 317 4679*****************************885 PP | |||||||
2 | ELK | 36.1 | 1.4e-12 | 237 | 258 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s SMil_00004618-RA_Salv 237 ELKNHLLKKYSGYLSSLKQELS 258 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.6E-21 | 92 | 136 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.6E-22 | 94 | 135 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.6E-27 | 144 | 195 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.6E-24 | 149 | 194 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.0E-6 | 237 | 258 | IPR005539 | ELK domain |
Pfam | PF03789 | 6.9E-10 | 237 | 258 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 237 | 257 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.957 | 257 | 320 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-19 | 258 | 332 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-13 | 259 | 324 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 262 | 323 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.18E-12 | 269 | 321 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 277 | 316 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 295 | 318 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEEYNLQLSE DANSRGGAFV YRGGPVLAGS SSIYARGGSF HLQSGDCYEH GAVVKTEAGT 60 SQNHAPRFQY PSHENLHDHH HHQTQTNPIQ VDVIKAKIIA HPQYSNLLEA YMDCQKVGAP 120 AEVVARLTAV REEFEARQVA TGASRDEYSK DPELDQFMEA YYDMLVKYRE ELTRPLQEAM 180 EFMRRIESQL NLLTNAPLRI FNSEEKSEGI GSSEEEQDNS GGETGVAEID PRAEDRELKN 240 HLLKKYSGYL SSLKQELSKK KKKGKLPKEA RQKLLSWWEL HYKWPYPSES EKVALADSTG 300 LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAALY MDGHYMPDAP YRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022870906.1 | 0.0 | homeotic protein knotted-1 isoform X2 | ||||
Swissprot | Q41330 | 1e-171 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A2G9GBL0 | 0.0 | A0A2G9GBL0_9LAMI; Transcription factor MEIS1 | ||||
STRING | EOY15624 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4973 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-125 | KNOTTED-like from Arabidopsis thaliana |