PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00004525-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 977aa    MW: 108723 Da    PI: 4.7522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00004525-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12644948
                           HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           de+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  SMil_00004525-RA_Salv  6 DEILRMAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 44
                           899********************9.************986 PP
2Myb_DNA-binding636.1e-205096148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  SMil_00004525-RA_Salv 50 KGPWSKEEDEVIIELVNKYGPKKWSTIANHLP-GRIGKQCRERWHNHL 96
                           79******************************.*************97 PP
3Myb_DNA-binding47.93.1e-15102144145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            + +WT++E++ l++a++ +G++ W+   + ++ gRt++++k++w+
  SMil_00004525-RA_Salv 102 KEAWTQDEELTLIRAHQIYGNK-WAELTKFLP-GRTDNSIKNHWN 144
                            579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.425144IPR017930Myb domain
CDDcd001677.35E-9644No hitNo description
SuperFamilySSF466898.61E-11654IPR009057Homeodomain-like
SMARTSM007174.0E-4646IPR001005SANT/Myb domain
PfamPF002492.0E-9644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-17652IPR009057Homeodomain-like
PROSITE profilePS5129433.29945100IPR017930Myb domain
SuperFamilySSF466892.85E-3147143IPR009057Homeodomain-like
SMARTSM007176.4E-194998IPR001005SANT/Myb domain
PfamPF002492.6E-185096IPR001005SANT/Myb domain
CDDcd001671.09E-165296No hitNo description
Gene3DG3DSA:1.10.10.602.9E-285399IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-21100151IPR009057Homeodomain-like
PROSITE profilePS5129418.775101151IPR017930Myb domain
SMARTSM007172.5E-14101149IPR001005SANT/Myb domain
PfamPF002491.3E-13102145IPR001005SANT/Myb domain
CDDcd001674.96E-11104144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 977 aa     Download sequence    Send to blast
MLASVDEILR MAVQRFKGKN WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEV  60
IIELVNKYGP KKWSTIANHL PGRIGKQCRE RWHNHLNPNI NKEAWTQDEE LTLIRAHQIY  120
GNKWAELTKF LPGRTDNSIK NHWNSSVKKK LDMYLASGLL SQFQGLPLPN QSEASSSSKA  180
QQSSEDNSIV RGGIEAEEAS ECSQGSNIAT ISRTTSNTTV HPVGDCRIAE ESNSIQYSED  240
YRPAIQEAAF SIPEAPCELS DKFLEHDFSL DWGALAGKDW QLHPNELPDM SLLDLGQESS  300
EMFVLTSSSG QNTNHEEVPF QQESHMPSGT FTSMVNMAVD ADTPNMIATS DCRMLYTDAD  360
QGGCCPSEVI NHIEALLHHS SMLQFSENET FASQSCYTPS DMLAASFPQS VPFPVQLPAA  420
DGQLMFDTDP NQYSTSHADQ EANPPSTHDG FIYPKESDRL QCEDNSVEEK ETPKLVSVND  480
FVLTSSNDSE SCPLMDKDTK TEEQKDSGAL FYEPPRFPSL DIPFFSCDLI QSGSDMHQEY  540
SPLGIRQLMI SSMTPFKLWD SPSRDDSPDA ILKSAAKTFT GTPSILKKRH RDLLSPLSEK  600
RGEKKLEGPR NQESYSNMTN CFPRLDFMFD ECIDKKGQLV SLSPNRRSFE VSCMEKENAA  660
PASGQEPNEG NKSIVISERE MTAEGFNNNG SDCSNSMTEK TAPTDLRTNS AAEKDSTELA  720
NESSGVLLEH DVNDLLFFSP DRFIIKNDRT VSLSARALTK QSSRRLDALS KHGAILTSSD  780
TCFSVLCSPR LCSKDRTNSF ITPTMQSSSP SAKKVESSGK GLANENNNIF VETPYKRTMD  840
SPSAWKSPWF INNFGPGPRV DTDITIEDIG YFLSPGEGSY DAIGLMKQLG EQTAGAFADA  900
QKVLGDETPE TIMKGKCLTN HDEEKEHDHN PDSASSFMTE RRTLDFSECG TPGKESARFS  960
SSTSFRSPSS YLLKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-64615114159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-64615114159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089667.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089827.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089990.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553179.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553183.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A4D9B4920.0A0A4D9B492_SALSN; Uncharacterized protein
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein