PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004213-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | TALE | ||||||||
Protein Properties | Length: 171aa MW: 20060.8 Da PI: 6.6827 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.5 | 5.3e-09 | 113 | 147 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp++ ++ LA+ +gL+++q+ +WF N+R ++ SMil_00004213-RA_Salv 113 KWPYPTEVDKVTLAETTGLDQKQINNWFINQRKRH 147 569*****************************985 PP | |||||||
2 | ELK | 26.1 | 2e-09 | 67 | 88 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Llr Y+ +++sLk EFs SMil_00004213-RA_Salv 67 ELKDRLLRLYGDHINSLKLEFS 88 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03791 | 2.9E-17 | 1 | 37 | IPR005541 | KNOX2 |
SMART | SM01256 | 4.7E-11 | 1 | 38 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.7E-5 | 67 | 88 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.237 | 67 | 87 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-4 | 67 | 88 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.455 | 87 | 150 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-19 | 88 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-11 | 89 | 154 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 92 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.72E-11 | 99 | 151 | No hit | No description |
Pfam | PF05920 | 1.7E-17 | 107 | 146 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 125 | 148 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
METYCDVLVK YKRDLSRPFD EATSFLNKIE NQLGNLCIDD GGLSSDEELS GGEAEANDPQ 60 MKTEDRELKD RLLRLYGDHI NSLKLEFSKK KKKGKLPKEA RQKLLEWWTV HYKWPYPTEV 120 DKVTLAETTG LDQKQINNWF INQRKRHWKP SENMHLAMME NLSGHLFMNG D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071110.1 | 6e-97 | homeobox protein knotted-1-like 6 isoform X1 | ||||
Refseq | XP_020554838.1 | 2e-97 | homeobox protein knotted-1-like 6 isoform X2 | ||||
Swissprot | Q84JS6 | 8e-81 | KNAT6_ARATH; Homeobox protein knotted-1-like 6 | ||||
TrEMBL | A0A2G9GWW1 | 6e-97 | A0A2G9GWW1_9LAMI; Transcription factor MEIS1 | ||||
STRING | Migut.E00181.1.p | 7e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-55 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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