PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00004118-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 280aa MW: 30583.1 Da PI: 5.831

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00004118-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLHe+Fv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl SMil_00004118-RA_Salv 27 KHRLRWTHELHEQFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 81 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.412	24	84	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-31	26	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-17	26	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-24	27	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-23	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
LLDCSTSTMD SMGGGNNVTS NANLASKHRL RWTHELHEQF VDAVAQLGGP DRATPKGVLR 60 VMGVQGLTIY HVKSHLQKYR LANYLPDSSS DGTKAEKKES GDMFSGLDSS SGMQITEALK 120 LQMEVQKRLH EQLEVQRQLQ LRIEAQGKYL KKIIEEQQRL SGALPEAPVS GVFVPEAEGI 180 CPESENKTDP GTPAATSEPP FADKLAKERN PAKSISFDES FSSHNDPQSP DSDCHVSSPL 240 LSPNERPEKK QRGSTDVACT TPEMVLSHSV LESSSSPPYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-24	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-24	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-24	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-24	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-24	27	84	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554068.1	1e-159	uncharacterized protein LOC105175200
Swissprot	Q9SJW0	1e-116	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A4D9BZG4	1e-159	A0A4D9BZG4_SALSN; Uncharacterized protein
STRING	XP_006467243.1	1e-142	(Citrus sinensis)
STRING	XP_006449962.1	1e-142	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	4e-98	G2-like family protein