PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00004035-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 9112.48 Da PI: 10.2325 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.8 | 1.2e-32 | 25 | 75 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++ SMil_00004035-RA_Salv 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 75 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.543 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-41 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-30 | 18 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.85E-38 | 18 | 76 | No hit | No description |
PRINTS | PR00404 | 4.7E-34 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-28 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-34 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-34 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MELQSDQSRE MSSERKIGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNRI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-21 | 17 | 76 | 1 | 60 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ699177 | 8e-56 | JQ699177.1 Nicotiana benthamiana agamous (AG) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019169239.1 | 6e-46 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_019169240.1 | 6e-46 | PREDICTED: floral homeotic protein AGAMOUS isoform X1 | ||||
Swissprot | Q40885 | 8e-45 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A4D8ZQW9 | 7e-45 | A0A4D8ZQW9_SALSN; MADS-box transcription factor, plant | ||||
TrEMBL | A0A4D9AML1 | 1e-44 | A0A4D9AML1_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.M00986.1.p | 1e-43 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.2 | 2e-30 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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