PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003935-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRF
Protein Properties Length: 386aa    MW: 41861.2 Da    PI: 8.9584
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003935-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.65.2e-24166209144
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                            d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  SMil_00003935-RA_Salv 166 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKNRPRSRKHVE 209
                            79****************************************97 PP
2QLQ40.77.5e-15107138233
                    QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 
                             FT +Qlq+L++Q ++ Ky++a+ PvPp+Ll+
  SMil_00003935-RA_Salv 107 LFTSSQLQELERQKMIHKYIMASIPVPPHLLL 138
                            6*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.5E-6106142IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166616.957107142IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.1E-10108138IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.665166210IPR014977WRC domain
PfamPF088793.3E-19167209IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MRNGGERKSF LSSSPLDCEV GLGLKMQLPP YSCKILYPLR RLTLALKFSL ANVTGDGGGG  60
GGPFFAGATN PPHFYDFSNG ALLQRSLDNA AAYRAYGCMM PVCGKALFTS SQLQELERQK  120
MIHKYIMASI PVPPHLLLST SPSPSSLSQC NTSSGLDLRY STNGSDPEPW RCKRTDGKKW  180
RCSRDVAPDQ KYCERHAHKN RPRSRKHVEI TPHNFPPKSS ALPSSTIPRS TSQFPYDQSR  240
CIEWLMRGGN SDGANTLYKN ASVYHPHFSD SSKIETTDQT TRLFIDTISD KGAAEKKQWP  300
SSSLSLSVCE GGDEKGDLGI GMMMKNQWVN PVSWMNSGGP LGEALCLGSA STIRGGGGAS  360
NLASPPSYGY SNSSSEDGGH ALNFIG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022855300.11e-83growth-regulating factor 8-like isoform X1
TrEMBLA0A4D8ZW151e-177A0A4D8ZW15_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-33growth-regulating factor 8