PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00003924-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 687aa MW: 76822.4 Da PI: 9.1052

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003924-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H SMil_00003924-RA_Salv 77 KCEKCSREFCSPINYRRHTRVH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MPAAKLCSSG TLNAMKSEEG NDSLDTFIRQ AIGKEPLLPF PRTVDNPVQW IQLLHALDQP 60 DLPGWPLLTP VKVQMQKCEK CSREFCSPIN YRRHTRVHRR SLNINKEWHK NRDLLAAFWD 120 KLSLERAKEV VSFNDIKLKD IAGSSVVKGL ASSLRRPGVW TLPQAYVKAG ATLLDIIQAK 180 PSRLPISSQE LFSILDDASE STFLCAGTAE SVQKYVFDGE TAKNSLELKN LVALASFLFE 240 QLLVKAWIAD KDAEALRCQK LLVEEEEAEQ KRQAVILERK KQKKLRQKEQ RFKEQYYGCS 300 RDLNVYVDAV DRPTSAEASD LSSPSDSNSN SNSQEVPTTL DSVHPQNKEA DEDIEVQFDA 360 SSEQKKQGDS PSVELQMVVA NGHRHVATNR LQVPKSQRGS RYGLHANLNP QTLKHELMHK 420 LGSSKDRSLQ NGNKVWTKKL KSNNDGENLK PPLQEVTSHQ IEQNNGEVII GSIPVTLKSY 480 VDQQQASHPN ETQDTCSTEH AVIKKKNASE KPVKSNYLQS STNRVASRLW RPVSRGETKN 540 VPPVGRSNED PGDSAILSKV HDHTPSNERS GQSQSLDNDG CHNGKQLHVV LDENAQRGFV 600 PFSSEAAKEF LARRWKEAIS GDHVKLVLSS GHEPPGRPDV QHASDPLRSN APNHGENQFG 660 RTIQVHAARK LDKNVKFKYI PKQKTIA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MPAAKLCSSG TLNAMKSEEG NDSLDTFIRQ AIGKEPLLPF PRTVDNPVQW IQLLHALDQP  60
DLPGWPLLTP VKVQMQKCEK CSREFCSPIN YRRHTRVHRR SLNINKEWHK NRDLLAAFWD  120
KLSLERAKEV VSFNDIKLKD IAGSSVVKGL ASSLRRPGVW TLPQAYVKAG ATLLDIIQAK  180
PSRLPISSQE LFSILDDASE STFLCAGTAE SVQKYVFDGE TAKNSLELKN LVALASFLFE  240
QLLVKAWIAD KDAEALRCQK LLVEEEEAEQ KRQAVILERK KQKKLRQKEQ RFKEQYYGCS  300
RDLNVYVDAV DRPTSAEASD LSSPSDSNSN SNSQEVPTTL DSVHPQNKEA DEDIEVQFDA  360
SSEQKKQGDS PSVELQMVVA NGHRHVATNR LQVPKSQRGS RYGLHANLNP QTLKHELMHK  420
LGSSKDRSLQ NGNKVWTKKL KSNNDGENLK PPLQEVTSHQ IEQNNGEVII GSIPVTLKSY  480
VDQQQASHPN ETQDTCSTEH AVIKKKNASE KPVKSNYLQS STNRVASRLW RPVSRGETKN  540
VPPVGRSNED PGDSAILSKV HDHTPSNERS GQSQSLDNDG CHNGKQLHVV LDENAQRGFV  600
PFSSEAAKEF LARRWKEAIS GDHVKLVLSS GHEPPGRPDV QHASDPLRSN APNHGENQFG  660
RTIQVHAARK LDKNVKFKYI PKQKTIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	284	ERKKQKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076143.1	0.0	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548920.1	0.0	uncharacterized protein LOC105160463 isoform X1
TrEMBL	A0A4D9BG75	0.0	A0A4D9BG75_SALSN; Uncharacterized protein
STRING	Migut.F00325.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-124	C2H2-like zinc finger protein