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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003916-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | Dof | ||||||||
Protein Properties | Length: 266aa MW: 29274.7 Da PI: 9.3124 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.5 | 1.7e-39 | 27 | 86 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +kcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + SMil_00003916-RA_Salv 27 DPPVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 86 6789*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-33 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-26 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.236 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MSPLPGGKDE SQSSSTRKAS SSSRAQDPPV KCPRCDSPNT KFCYYNNYSL TQPRHFCKTC 60 RRYWTKGGAL RNVPIGGGCR KNKKIKRLPA DSKDSDVPLK FAMDFQLPNP SLSNSSPHSH 120 TPCFNLDPSS LMGFAFPLKQ GQNLGFQEMV HHTNLATSIE SLSSINQDLH WKLQQQRLAT 180 LFVENATHKE ASGNIQFQSL PENPKTDSCL IGTSRKDGSF SNNTDTFLNN SPPTPHPAGN 240 NFNGAAGNWS GGIQAWTELS HYTSLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 7e-53 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 7e-53 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. | |||
GenBank | EU947524 | 7e-53 | EU947524.1 Zea mays clone 346044 mRNA sequence. | |||
GenBank | KJ726977 | 7e-53 | KJ726977.1 Zea mays clone pUT3678 C2C2-DOF transcription factor (DOF32) gene, partial cds. | |||
GenBank | KJ726997 | 7e-53 | KJ726997.1 Zea mays clone pUT3969 C2C2-DOF transcription factor (DOF24) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097460.1 | 4e-87 | dof zinc finger protein DOF5.7-like | ||||
Swissprot | Q9LSL6 | 3e-57 | DOF57_ARATH; Dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A4D8ZTM8 | 2e-92 | A0A4D8ZTM8_SALSN; Uncharacterized protein | ||||
STRING | EOX91892 | 3e-75 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5242 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65590.1 | 6e-47 | Dof family protein |
Publications ? help Back to Top | |||
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