PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003787-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

M-type_MADS

Protein Properties

Length: 310aa MW: 34397.5 Da PI: 10.5703

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003787-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.4	1.1e-29	258	307	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+ly y+ SMil_00003787-RA_Salv 258 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYIYA 307 79*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.3E-37	250	309	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.076	250	310	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-31	252	272	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.90E-36	252	309	No hit	No description
PROSITE pattern	PS00350	0	252	306	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-27	252	309	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	259	305	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-31	272	287	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-31	287	308	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGNQIIGYRS PLPLHLLRRR RLLIAPLRRR TPKPSILSPP PPPPRCSTSS SSSSFSSPEP 60 SSSTPVAPTF FSSSLSFFPL YPPSPPTPIY LALLAASFLA FVSFVEICCG SHSRRCGRAG 120 CRGLKRGGGY DKPCLLAKLR NMALPNGSTV LLSCLRCGCP ISEGFESMLL CRSWIIARVL 180 LVEFLCKFLV DGFGITSLAA LLIDQATTVL FLMRNRNGKK ALLYSCLGRC CLSMEFPNQE 240 SESSNLMRKN WRGKIQIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA EVALVVFSSR 300 GRLYIYANNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	5e-18	252	308	2	58	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	5e-18	252	308	2	58	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	5e-18	252	308	2	58	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	5e-18	252	308	2	58	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1n6j_A	8e-18	252	308	2	58	Myocyte-specific enhancer factor 2B
1n6j_B	8e-18	252	308	2	58	Myocyte-specific enhancer factor 2B
3kov_A	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3kov_B	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3kov_I	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3kov_J	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3mu6_A	4e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3mu6_B	4e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3mu6_C	4e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3mu6_D	4e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_A	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_B	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_C	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_D	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_I	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A
3p57_J	7e-18	252	308	2	58	Myocyte-specific enhancer factor 2A

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-33	MIKC_MADS family protein