PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00003473-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 545aa MW: 61656.6 Da PI: 8.5309 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.9 | 2.9e-17 | 57 | 151 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 kfY++YAk +GF rks+++ s ++g+i + + C++eg + + ++ k++r+r++ ++gC+ak+ + ++ g+++v ++ SMil_00003473-RA_Salv 57 KFYRKYAKACGFVSRKSTKSVS-NDGTIRIQYMLCNREGAAPNADELlladdyFPKKKRKRSSCKVGCEAKIIFQIMSYGRYYVRIFV 143 6*************99998887.88889999999******99998889999998899999**************************** PP FAR1 83 leHnHela 90 + HnH+++ SMil_00003473-RA_Salv 144 EGHNHKMV 151 *****997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-15 | 57 | 151 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.163 | 348 | 384 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 545 aa Download sequence Send to blast |
MASLSSNMSE SMSASEVIEE SATDVLGESA NVWFPECDDS KKPFVGQIFN DLVKAVKFYR 60 KYAKACGFVS RKSTKSVSND GTIRIQYMLC NREGAAPNAD ELLLADDYFP KKKRKRSSCK 120 VGCEAKIIFQ IMSYGRYYVR IFVEGHNHKM VSAGTRHLLP SNRNIEPIHQ YFIHAGIKAN 180 FGPMRTFRMY VELVGGFDKA GCTSIDFKNY VRDLNVHIVD SDAHMLLDTL KNKKEDCEGF 240 QYFYDVDDEN QLSRLIWTDQ QSVNNYKNFG EAVSFDATYC TNRIDLADEI GVPPMCTIHA 300 IEKHASTLYT NSIFKEVQAE MKVAALSCIM SKMEGNKYVV DDNIDGLFTV THDTVTDYFR 360 CTCNLFTRKG YLCSHIFYVL RTLKVVEIPE KYIANRWCKS YMLSTFQATD KMTCPTRNLP 420 IGNDALFKVF SNCIGHVNGD EELRKQLLAD FIDVENKFKK LGKQNPMANS KAAMFNEFYG 480 ATPPDVPTVL PPAISKTKGS GAGGRRKSNM EKAITLSQKP LRNCKRCNTM AHHDSRNCPT 540 KAQPK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 116 | KKRKRS |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16839 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-29 | FAR1-related sequence 5 |