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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003463-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | NAC | ||||||||
Protein Properties | Length: 559aa MW: 62041.7 Da PI: 4.5417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.2 | 1.2e-47 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtd elv +yLk+k+ gkkl e+i+ev+iyk+ PwdLp k ++k+++ ew+fF++r+kkya g r +rat++gyWk+t SMil_00003463-RA_Salv 22 LPPGFRFHPTDVELVLYYLKRKILGKKLLY-EAIAEVNIYKYSPWDLPdKsSLKSKDLEWFFFCPREKKYACGVRVKRATENGYWKTT 108 79*************************888.89**************95346667777****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+++ + ++++vg ktL+f+ g+apkge+tdWv+heyr+ SMil_00003463-RA_Salv 109 GKDRTISC-NEKTVGAVKTLIFHLGHAPKGERTDWVIHEYRV 149 ********.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-58 | 10 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.939 | 22 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-24 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
LVGVYFSSWI IRCSVVPVSM RLPPGFRFHP TDVELVLYYL KRKILGKKLL YEAIAEVNIY 60 KYSPWDLPDK SSLKSKDLEW FFFCPREKKY ACGVRVKRAT ENGYWKTTGK DRTISCNEKT 120 VGAVKTLIFH LGHAPKGERT DWVIHEYRVV DNQLAEAGVQ DNYVLCKVFK KNGLGPKNGA 180 QYGAPFNEAD WTDDDDNVSE NHAISLAAEG LPQTSGMQNE EQSLPLGSGL FDSGNEPLPI 240 LEDGPSTSAV APNSMVAADK TNDEIVHMLA SFADEDMLLP DGNGFSQDDL GGNGNNRLLS 300 YNEGLDIYNG LHDLDSWTAI NEGIFDFSGS HNVDYPLNML PEDNSTYIEL DDLLPPLDCS 360 NGVTGTPFSS LCRSSASYDH ENMEQLHSRT RFAGMDDQNI SYANELAVLP NTSEGDISLN 420 VLHMVDYPFY QGPNASYNLD FSFGQLENPV CSPHNMERGS HLENLYSRFK ECIPAHLPSA 480 AALSPCGGSS IHIKAEVTHG AGECTNEALA VMMGGSSSCW CNLLFWKIQL WVVEDLLDLR 540 QIVKCQLSVE LQVLVRMEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-46 | 20 | 177 | 18 | 174 | NAC domain-containing protein 19 |
3ulx_A | 9e-46 | 20 | 171 | 13 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099748.1 | 0.0 | NAC domain-containing protein 82-like isoform X1 | ||||
TrEMBL | A0A4D9BV25 | 0.0 | A0A4D9BV25_SALSN; Uncharacterized protein | ||||
STRING | Migut.H00727.1.p | 1e-179 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 8e-89 | NAC domain containing protein 82 |