PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003402-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 336aa    MW: 37505 Da    PI: 6.3516
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003402-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.21.7e-08195247557
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                            kr++r   NR +A rs +RK  +i+eL+ kv++L++   +L  +   +++   
  SMil_00003402-RA_Salv 195 KRAKRIWANRQSAARSKERKMRYIAELQSKVQSLQTDKASLSMQFALMQEDTN 247
                            9***********************************99999877766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-11191255IPR004827Basic-leucine zipper domain
PfamPF077161.4E-7192242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-7193249No hitNo description
PROSITE profilePS502179.714193256IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.03E-10195249No hitNo description
CDDcd147034.43E-18196245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
LMNMNSRSWL PPLGRSSVSS YSTKPEQSAS SNLRPIGPEC SFKKEHKMSS HSSQFSFEIS  60
RMPENPPNNL AHRRTHSDVL ALLNDVSFDG DLGIVGGSDG LSVFDDTEED LLPEYFVLDK  120
SNLISETMEE LSTSAADAGS SCIQQRKLQH SQSMVLKSCI KTEMAKPGSE NPSSAESDKS  180
ISAANLAELA LTDPKRAKRI WANRQSAARS KERKMRYIAE LQSKVQSLQT DKASLSMQFA  240
LMQEDTNCLA SENIELKLQL QSFEQQVHLQ DAVNDALKEE IQHLKVLTGQ AMLNGPAPPP  300
YGTNQNYNTN SHAQPLQYQF RQHQLDQFQP RQLLLH
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091638.11e-115probable transcription factor PosF21
RefseqXP_011091639.11e-115probable transcription factor PosF21
SwissprotQ040889e-80POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A4D8XNJ81e-169A0A4D8XNJ8_SALSN; Uncharacterized protein
STRINGMigut.G01348.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2044723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.12e-91bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]