PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00003376-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 462aa    MW: 50886.3 Da    PI: 9.2816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00003376-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-0579101123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C+k F r  nL+ H r H
  SMil_00003376-RA_Salv  79 FVCEICNKGFQRDQNLQLHRRGH 101
                            89*******************88 PP
2zf-C2H215.84.1e-05155177123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H++t+
  SMil_00003376-RA_Salv 155 WKCDKCSKKYAVQSDWKAHQKTC 177
                            58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.15E-878101No hitNo description
Gene3DG3DSA:3.30.160.601.5E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01779101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94979101IPR007087Zinc finger, C2H2
PfamPF121717.2E-579101IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035568120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.15E-8150176No hitNo description
SMARTSM0035594155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSNITGDEGS FSSGEVQQQQ EKQSNAAAAA ASTTSNGSSG SHKQPQPAPK KKRNLPGTPD  60
PTAEVVALSP TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TTTEVKKRVY  120
ICPEPTCVHH NPGRALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHQKTCGTR  180
EYKCDCGTIF SRRDSFITHR AFCDALAEEN NKLEHEHEHV HGHVWIQQPI KIPPPRSPPN  240
PIQAHEHGRR RRHVLVGFRQ PIRKPAEHAL VVVRAPAELQ LEPDGLQLPP RQQELGQIFG  300
SAQMSATALL QKAAQMGATA TNSPMMQKNF VSTMAAGPAA RPGPYENFHG EQFNGGFAAQ  360
LMQKGPQELF EGGADMVMYG GMLMDQNINP GGGGGGGGGF LKNMVEGSGV EMNGNDMTTV  420
DFLGVGGSRV AHDQINQQRM QVMQSNNPFH HHHAESDVDN TF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-35151213365Zinc finger protein JACKDAW
5b3h_F6e-35151213365Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079713.11e-170protein indeterminate-domain 2-like
TrEMBLA0A4D8YT640.0A0A4D8YT64_SALSN; Uncharacterized protein
STRINGXP_009620710.11e-159(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.19e-93indeterminate(ID)-domain 2