![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SMil_00003305-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18934.8 Da PI: 9.733 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.4 | 3.9e-18 | 10 | 48 | 2 | 40 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i n+ +r+vtf kR g+lKKA+ELS+LC+++va++i SMil_00003305-RA_Salv 10 EIPNEDRRNVTFRKRTDGLLKKANELSILCGIDVAIVIH 48 689**********************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.586 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-15 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.05E-19 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.11E-19 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-17 | 11 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MTRKRIKHEE IPNEDRRNVT FRKRTDGLLK KANELSILCG IDVAIVIHRK EQSNVVLWPS 60 PPIFGERLQK FMESRNEGRE RRIATHESFM EQMVQGEMED VVKLKKAIQI KESQQLVLNS 120 LQTNSFDGFR VDQLNAMNSF ADHMLKKLQL KDHQLNDIHE Q |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9C2F6 | 5e-76 | A0A4D9C2F6_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G05860.2 | 6e-18 | M-type_MADS family protein |