PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003243-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 309aa MW: 34580.6 Da PI: 7.9827

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003243-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F ++ +L+rH +tH SMil_00003243-RA_Salv 80 HPCSACGEVFQSSPLLERHRSTH 102 78********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.93	80	102	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.59E-13	114	305	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.3E-8	119	304	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MVSIRPTFLS LFFLLLHLPC FTPSPRRRRS RSTAPKTSFF SFFKRLFSNS NPLPPPPPPS 60 RRSPSSSTRS LRLSPTLDIH PCSACGEVFQ SSPLLERHRS THHLVSELAA DDENIVRIIF 120 NTGWPDPART PNIERILKIH NTPAITSRFE EYRERVKSRA AAAPPPRRDE RCVADGNELL 180 RFHCTTFVCG LDSGDECGRL YCSLCGIIRS GFSPKMDGIS TLPTSYAAHV SMPADMEAEF 240 EFMNVRRAVL VCRVIAGRVG CDPWEADKED PGFDSLAGRG EGDDEDEILV FNPRAVLPCF 300 VIVLNCFKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078217.1	1e-119	uncharacterized protein LOC105162016
TrEMBL	A0A4D9AAL7	1e-130	A0A4D9AAL7_SALSN; Uncharacterized protein
STRING	XP_009630930.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11834	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	9e-76	C2H2 family protein