PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003180-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24274.1 Da PI: 7.3945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.5 | 1.1e-08 | 109 | 156 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ Lr+++P + k + a +L + ++Y++sLq SMil_00003180-RA_Salv 109 SHSLAERVRRGKINERLRCLRDIVPGC----YKTMGMAVMLDEIINYVQSLQ 156 8*************************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-16 | 103 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.45E-10 | 103 | 160 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-16 | 105 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.301 | 105 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-6 | 109 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-8 | 111 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MADYHQLILK ESFDPDVELI NNLSASGLFQ NHDDFNFHNS ILPTHHEFDD HKQRNKTKAS 60 TPAESTCSYQ SHHTANQQRQ RRGGRAKKEE EKGGEVIHVR AKRGQATDSH SLAERVRRGK 120 INERLRCLRD IVPGCYKTMG MAVMLDEIIN YVQSLQNQVE FLSMKLTAAS SFYDFNSDTD 180 AIEAMQRANA IEAIKAGNVA NPCAHLPHNF GYYP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257529 | 0.0 | KP257529.1 Salvia miltiorrhiza clone 96 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016567559.1 | 7e-66 | PREDICTED: transcription factor BEE 3-like | ||||
Swissprot | Q8GWK7 | 3e-61 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A0H3YBV0 | 1e-161 | A0A0H3YBV0_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Bostr.3288s0027.1.p | 1e-65 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3971 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 4e-62 | BR enhanced expression 1 |
Publications ? help Back to Top | |||
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