PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00003120-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

C2H2

Protein Properties

Length: 398aa MW: 44173.3 Da PI: 9.6345

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00003120-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H SMil_00003120-RA_Salv 72 FVCEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	11.9	0.00068	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ SMil_00003120-RA_Salv 148 WKCDKCSKIYAVQSDWKAHSKTC 170 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.02E-6	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	72	94	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	6.0E-5	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	72	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	280	113	143	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.7E-4	136	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.02E-6	143	168	No hit	No description
SMART	SM00355	180	148	168	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MFPMVIPNSS EEGSNSSSAR VQDLGTLNSM VQNSNAMPQM KAKKKRNLPG NPDPDAEVIA 60 LSPKTLMTAN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSSKENRK RAYVCPEPSC 120 LHHHPSRALG DLTGIKKHYC RKHGEKKWKC DKCSKIYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRYIIFI PFKFINFNFL YRKDSFITHR AFCDALAEES ARLSAATNSM LAPNPNGQPY 240 LFSPQSLLPP PPLLPFSAHH RHFRSPYPNP INADVQIKHE SLHIPLSSPL YQDHMTSAFQ 300 VSGGAAPLSA TALLQKAATM GAAGGHVGST MAHLDMHVAS AWHKSSDGLT RDFLGLTGDQ 360 SSGNGGGREM LPLVKLSAFE RDHHGFGFSE TCSGWGNC

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MFPMVIPNSS EEGSNSSSAR VQDLGTLNSM VQNSNAMPQM KAKKKRNLPG NPDPDAEVIA  60
LSPKTLMTAN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSSKENRK RAYVCPEPSC  120
LHHHPSRALG DLTGIKKHYC RKHGEKKWKC DKCSKIYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRYIIFI PFKFINFNFL YRKDSFITHR AFCDALAEES ARLSAATNSM LAPNPNGQPY  240
LFSPQSLLPP PPLLPFSAHH RHFRSPYPNP INADVQIKHE SLHIPLSSPL YQDHMTSAFQ  300
VSGGAAPLSA TALLQKAATM GAAGGHVGST MAHLDMHVAS AWHKSSDGLT RDFLGLTGDQ  360
SSGNGGGREM LPLVKLSAFE RDHHGFGFSE TCSGWGNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-32	144	229	3	71	Zinc finger protein JACKDAW
5b3h_F	1e-32	144	229	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079920.1	1e-164	protein indeterminate-domain 12
Swissprot	O22759	1e-112	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A4D9A7Y8	0.0	A0A4D9A7Y8_SALSN; Uncharacterized protein
STRING	Migut.D00357.1.p	1e-149	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-105	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]