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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003103-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 269aa MW: 29531 Da PI: 8.9098 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.2e-32 | 91 | 148 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + +rY+eClkNhAas+Ggh+vDGCgEfmp+ ge+gta++l+CaAC+CHRnFHR+ev+ e SMil_00003103-RA_Salv 91 CVIRYRECLKNHAASMGGHVVDGCGEFMPN-GEQGTAEGLRCAACDCHRNFHRKEVDGE 148 678**************************8.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-22 | 92 | 146 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.1E-30 | 93 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.8E-30 | 94 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.348 | 95 | 144 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.04E-20 | 194 | 266 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-31 | 196 | 267 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.572 | 203 | 267 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 5.5E-25 | 205 | 262 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MERRGQERDI GLNPESESPV KLPLAAIVST PADRRGNATA PTRRGSAIFS PTQTLDHRQR 60 LKDPSPDPDP STPTAEGPSN SRTPPSPPNN CVIRYRECLK NHAASMGGHV VDGCGEFMPN 120 GEQGTAEGLR CAACDCHRNF HRKEVDGEAQ PSNLYQFRTP VVNTQTPQAA GGFGAAAPAI 180 MSFGDESSSE DLNMGGGGGH AAGSKKRFRT KFSQEQKDRM QELAEKLGWR IQKQDEQQVQ 240 QLCQETGVKR QVFKVWMHNN KQAIKKRQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 204 | 263 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099626.1 | 1e-105 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_022884890.1 | 1e-105 | zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_022884891.1 | 1e-105 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 1e-61 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A4D9C4B7 | 1e-142 | A0A4D9C4B7_SALSN; Uncharacterized protein | ||||
STRING | XP_009804697.1 | 8e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-54 | homeobox protein 24 |