PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SMil_00003065-RA_Salv | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
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Family | bHLH | ||||||||
Protein Properties | Length: 569aa MW: 62947.9 Da PI: 7.544 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.2e-13 | 400 | 446 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq SMil_00003065-RA_Salv 400 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 446 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 8.1E-54 | 46 | 234 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 396 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.91E-13 | 399 | 450 | No hit | No description |
SuperFamily | SSF47459 | 1.22E-18 | 399 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 400 | 446 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-18 | 400 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-16 | 402 | 451 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00958 | 508 | 559 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MGVVGWSNED KAMAAAVLGT KAFDYLMSSS VSAECSLMAM GSDENLQNKL ADLVERPNSS 60 NFCWNYAIFW QLSRSKAGDL VLGWGDGCCR EPRDDEESEV TRILKMRLED ESQQTMRKRV 120 LQRLHTLFGG GDEENYAFGL DKVTDTEMFF LASMYFSFPR GEGGPGRCFG SGKYVWLSDS 180 LKSSVDYCVR SFLAKSAGMQ TIVLIPTDVG VVELGSVRCI PESMELVKVV GSSFSSFSSL 240 LRSKQAAAAA VVTVTDKKDT NAPIPNLAIG NRPEVAPKIF GQDLNSSHVQ FRENVSVRKP 300 EVQERTWDAS GNRNRLPFTN NRNGFHGLRG HSIHQKPAQM HIDFTGATSR PLTSSHPQSL 360 ESELSDVEAS CKEEAAGLSE DKRPRKRGRK PANGRDEPLN HVEAERQRRE KLNQRFYALR 420 AVVPNISKMD KASLLGDAIA YITELQKKLK DMESERERLG SISREASVSE ANSNRESQDL 480 LASSINIEAG REEVTVRISC PLDAHPASRV IQAINDAQAT IIDAKMATGS ERVFHTFVVK 540 SHGSERLTKE KLIEAFSRRS SSPHQLSLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 394 | 456 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 381 | 389 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257446 | 0.0 | KP257446.1 Salvia miltiorrhiza clone 13 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093944.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A0H3Y7G5 | 0.0 | A0A0H3Y7G5_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_009781532.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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