PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002993-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 268aa    MW: 29619.3 Da    PI: 7.4639
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002993-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.4e-3089142155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  SMil_00002993-RA_Salv  89 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142
                            59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05986145IPR017930Myb domain
SuperFamilySSF466892.33E-2086146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-3188147IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-2490142IPR006447Myb domain, plants
PfamPF002499.5E-892141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MREEDSNWFS KWEEELPSPE DLMPLSQSLI TPDLALAFNI PNHHHHHAPP PPPPRSPRRN  60
SSGEFDSPEV SAAAACGGAS DEPARTLKRP RLVWTPQLHK RFVDAVAHLG IKNAVPKTIM  120
QLMSVDGLTR ENVASHLQKY RLYLKRMQSI SAGGGGAASG GDPATDHLFA SSPVPPHFLH  180
PVGRAGSEHF LPFVPAAMHH HQMAVVAPPH HHHHQQFRHF GNSPPNGQFD HPYMRPQVQR  240
LPPYVEDLES STPASGRKVL TLFPTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-3189145157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126135e-60CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070088.11e-122transcription factor PCL1
SwissprotO222102e-58MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A4D9C7R81e-132A0A4D9C7R8_SALSN; Two-component response regulator ARR-B family
STRINGXP_010036386.11e-108(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.17e-73G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]