PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

SMil_00002919-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

MIKC_MADS

Protein Properties

Length: 183aa MW: 20998.2 Da PI: 8.6064

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00002919-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.9	2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRrng+lKKA+ELSvLCd ++ ii+s +gkly y+s SMil_00002919-RA_Salv 9 KRIEDKSSRQVTFSKRRNGLLKKAKELSVLCDLDIGAIIYSCRGKLYHYCS 59 79***********************************************96 PP
2	K-box	35.3	4.7e-13	102	156	44	98
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++Ls+ + ++Le+q e++l + R++K++lll+ i+ l +kek l+ee+ L++k+ SMil_00002919-RA_Salv 102 DDLSVADFMHLEKQFETALIQARATKTHLLLKTISSLEEKEKLLEEEKILLQEKI 156 589*************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.7E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.45	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.55E-30	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.16E-36	2	71	No hit	No description
PRINTS	PR00404	5.4E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.946	70	162	IPR002487	Transcription factor, K-box
Pfam	PF01486	8.1E-10	102	156	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGRRKLEIKR IEDKSSRQVT FSKRRNGLLK KAKELSVLCD LDIGAIIYSC RGKLYHYCST 60 NSLSEILQRY HSRAETEAGP STQVCEKQVS RYVMEFEEPS ADDLSVADFM HLEKQFETAL 120 IQARATKTHL LLKTISSLEE KEKLLEEEKI LLQEKINGSK GKSKTKIPTI DLNALPFEER 180 MSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-18	1	86	1	86	MEF2 CHIMERA
6byy_B	1e-18	1	86	1	86	MEF2 CHIMERA
6byy_C	1e-18	1	86	1	86	MEF2 CHIMERA
6byy_D	1e-18	1	86	1	86	MEF2 CHIMERA
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071241.1	5e-68	agamous-like MADS-box protein AGL27 isoform X4
TrEMBL	A0A4D9BPZ6	1e-70	A0A4D9BPZ6_SALSN; Uncharacterized protein
STRING	XP_009795052.1	2e-61	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	2e-32	AGAMOUS-like 31